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Enseignement scientifique et technique - Ath-Etr-IST16 : IST16-Advanced course on Microbial MultiOmics

Descriptif

Instituto Superior Tecnico Lisboa

Objectifs pédagogiques

A deluge of information originating from the use of high-throughput sequencing methods and other genomic scale technologies has been deposited in specialized databases over the last years. Mining of biological information from databases is critical to understand living organisms, to predict their behavior, and to exploit them. The course aims to introduce students on the use of bioinformatics tools to study the biology of microorganisms at a genome-wide scale, in an integrative perspective, and focused on the use of various Omics approaches including Genomics, Metagenomics, RNomics and Proteomics

effectifs minimal / maximal:

15/25

Diplôme(s) concerné(s)

UE de rattachement

Pour les étudiants du diplôme Ingénieur AgroParisTech

Knowledge on Biochemistry, Molecular Biology, Genetics and Genomics

Pour les étudiants du diplôme Accueillis IAE forestiers (ingénieurs de l'Institut Agro Dijon)

Engineering, Design and Marketing students. The participants are required to bring a laptop for the course.

Pour les étudiants du diplôme Accueillis cursus ing 2e et 3e année (erasmus et école)

Engineering, Design and Marketing students. The participants are required to bring a laptop for the course.

Format des notes

Numérique sur 20

Pour les étudiants du diplôme Ingénieur AgroParisTech

Vos modalités d'acquisition :

Practical class reports and final examination quiz

Le coefficient de l'UE est : 2

Pour les étudiants du diplôme Accueillis IAE forestiers (ingénieurs de l'Institut Agro Dijon)

Vos modalités d'acquisition :

Minimum Viable Product (MVP) and Final Lessons Learned presentation and video.

Le coefficient de l'UE est : 2

Pour les étudiants du diplôme Accueillis cursus ing 2e et 3e année (erasmus et école)

Vos modalités d'acquisition :

Minimum Viable Product (MVP) and Final Lessons Learned presentation and video.

Le coefficient de l'UE est : 2

Programme détaillé

Genomes structure and organization. Genome sequencing methods and strategies. Genome annotation.

Metagenomics.

Genome-wide expression analysis: transcriptomics, proteomics. RNomics.

Functional genomics tools

Practical classes will focus on the use of bioinformatics tools for Genome annotation and comparative genomics; Metagenomics; Non-coding RNA secondary structure and target prediction; Transcriptomics; Quantitative analysis of 2-dimensional protein gels; Interpretation of the biological meaning of genome-wide data.

Mots clés

Biochemistry, Biology, Environmental sciences, Software and applications development and analysis
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